Precision fermentation

DEFINITION

Last update: 02/06/2026

Since the 1990s, precision fermentation (PF) has been driving innovation in the food industry for sustainable protein alternatives and ingredients, enabling the production of animal-free versions of traditionally animal-derived food ingredients like dairy proteins (whey and casein), egg proteins, and chymosin (rennet) for cheesemaking. Other ingredients common to the food industry are also produced using PF, like citric acid and other organic acids.

The Precision Fermentation Alliance (PFA) and Food Fermentation Europe (FFE) have issued a referenced industry-standard definition for Precision Fermentation:
“Precision fermentation (PF) combines the process of traditional fermentation with the latest advances in biotechnology to efficiently produce a compound of interest, such as a protein, flavor molecule, vitamin, pigment, or fat. A specific DNA sequence is inserted into a microorganism to give it instructions to produce the desired molecule when fermented. At the end of the fermentation process, the resulting compounds are filtered out, separating them from the microorganisms that produced them”. [1, 2, 3, 4] 

Therefore, PF is a biotechnological process that uses microorganisms such as bacteria, yeasts, microalgae or fungi, often genetically modified, as microscopic “factories” to produce specific food ingredients traditionally derived from animals or plants through an upstream process. The downstream stage of the process plays a crucial role in removing unwanted compounds, producing strains, and eliminating impurities through filtration and purification steps. [3, 4, 5, 6].

As of 2026, international consensus guidelines from the European Food and Fermentation Cultures Association (EFFCA) and the Good Food Institute define PF as distinguished from biomass fermentation because it relies on microbially engineered hosts to produce low-volume, high-value functional ingredients rather than whole microbial cell mass. Host organism selection—ranging from prokaryotic bacteria (e.g., E. coli), which lack complex post-translational modifications, to advanced eukaryotic systems such as filamentous fungi and yeasts capable of complex glycosylation— therefore becomes a foundational design constraint for achieving structural homology with conventional counterparts. (EFFCA Publications and Joint Industrial Definitions; UK FSA Review on Technical Production Methods and Host Selection )

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GOING FURTHER

Discover what Mérieux NutriSciences can do about this topic on our website: PFAS IN WATER You can also get more precise data using our specialized digital tools…